Supplemental Table S1. Genomic information of total 36 genes available on chicken W chromosome and primers used for the gene expression analysis

No. Chromosome Start Stop Strand GeneID Gene symbol Gene name Refseq mRNA accession no Refseq protein accession no Protein length F primer (RT-PCR) R primer (RT-PCR) Product size
1 W 13086 74398 100859467 LOC100859467 ras GTPase-activating protein 1-like XM_015300408.1 XP_015155894.1 414 ATGTCGGAGCAAGGAACTGG CAAAGCGACGTCCACCAATG 548
2 W 99066 172630 + 427134 UBE2R2L ubiquitin-conjugating enzyme E2 R2-like XM_424727.5 XP_424727.3 238 CGGCTACTTCAAGGCTCACA CACGACTCCTCATTGCCAGA 552
3 W 192483 241426 407091 UBAP2 ubiquitin associated protein 2 NM_001277104.1 NP_001264033.1 1099 CAGCCTTGGCCTGAGTGTTA GGAGTCGAGGCAGTGTTCAA 567
4 W 589579 917322 100859602 LOC100859602 zinc finger SWIM domain-containing protein 6-like XM_015300409.1 XP_015155895.1 772 TGCAAAGCGTCTCTGCTGTA AACAGTTTCCGGCTCCGATT 565
5 W 1442318 1504348 + 431564 ATP5A1W ATP synthase, H+ transporting, mitochondrial FI complex, alpha subunit 1, cardiac muscle XM_429118.5 XP_429118.3 553 GCTCAGTTGGTGAAGAGGCT AGCTTCATGGTACCTGCCAC 536
6 W 1511476 1710555 + 100858742 LOC100858742 chromosome Z open reading frame, human C18orf25 pseudogene XM_015300411.1 XP_015155897.1 354 GAGAGCGATAAGGCAACGGA CTGAGGTACTGCAGTTGCCA 585
7 W 1769135 1812821 + 425347 LOC425347 zinc finger protein 532-like XM_015300414.1 XP_015155900.1 517 CTGCCAGATGCTGCTTCCTA TATTCCCAGGTTTGGTGGCC 559
8 W 1845590 1847326 + 107055424 LOC107055424 zinc finger protein 532-like XM_015300415.1 XP_015155901.1 167 CAACCTCTGCTCTATCGCCA TCATTTACCTTTCCATGTTCCTTCC 401
9 W 1953096 1954928 100857334 RPL17L 60S ribosomal protein L17-like XM_003643344.3 XP_003643392.2 146 GGCCACCAAGTACCTGAAGG TTACTCCCGAGCCATCAGC 427
10 W 2000273 2003732 + 107049046 LOC107049046 60S ribosomal protein L17 XM_015300416.1 XP_015155902.1 213 ACCCTACCAAGTGTGAGTGC TCATCTCAATGTGGCAGGGG 504
11 W 2095868 2103906 + 107055427 LOC107055427 uncharacterized LOC107055427 XM_015300418.1 XP_015155904.1 233 TGAGACGCAGGAACAATGCT CAGGGGATCTTGGCCAACAA 570
12 W 2255017 2281254 + 107055428 SMAD7L mothers against decapentaplegic homolog 7-like XM_015300419.1 XP_015155905.1 388 GGAGGGTGAACTGAAGGCTC CAAGGAGGGCTCTTGGACAG 556
13 W 2631470 2638494 107055429 LOC107055429 E3 ubiquitin-protein ligase NEDD4-like XM_015300420.1 XP_015155906.1 202 ACCTGAAGCCAAATGGGTCT CCTTCAGCATTTTCAACTGCCA 544
14 W 2720821 2942316 107055431 LOC107055431 E3 ubiquitin-protein ligase NEDD4-like XM_015300422.1 XP_015155908.1 663 FGCCAGTCCTCAGGAGCTAT AGGAGAGCTGTAGGGTGAGG 553
15 W 2951669 2960297 + 107055430 LOC107055430 endogenous retrovirus group K member 11 Pol protein-like XM_015300421.1 XP_015155907.1 357 ATGGATGTGACGCATGTGGT CTATAAGCGGCCACGACTGT 574
16 W 3065668 3086087 426516 HNRNPKL heterogeneous nuclear ribonucleoprotein K-like NM_001031385.1 NP_001026556.1 427 CAAATGGCAAACGTCCTGCA GGGCCCGTCCTTTAATTGGA 543
17 W 3151299 3287050 107049174 LOC107049174 Golgi phosphoprotein 3-like XM_015300432.1 XP_015155918.1 293 CTCAGGATFACGTGGCTGCA GCCGTACTCTCTTTGTGGCT 551
18 W 3303786 3305258 100857682 LOC100857682 uncharacterized LOC100857682 XM_015300431.1 XP_015155917.1 443 GTGGGGGAAAGACCTFACGG CAAACCAGGAGTCCAGCCAT 591
19 W 3399794 3402362 107055436 LOC107055436 endogenous retrovirus group K member 8 Pol protein-like XM_015300435.1 XP_015155921.1 634 GACGCGGGATGGAAGTCTAG TTATGGAGGCTGCACACTGG 527
20 W 3408001 3408486 107055434 LOC107055434 ribonuclease H-like XM_015300433.1 XP_015155919.1 161 CGGAGAAGAGCCCCATFCAG CCAGCGTGTCTGCTTCATCA 438
21 W 3431953 3485141 + 107055435 LOC107055435 vasculin-like XM_015300434.1 XP_015155920.1 332 TFTGCTCCAGCCTGGCTFAA GCTTGTGCCGGITCCAnTT 600
22 W 3609318 3611707 107055438 LOC 107055438 uncharacterized LOC107055438 XM_015300437.1 XP_015155923.1 217 CTTCTCCCCATGTCTGCCAG TGAGGGACCATGTCAAAGGC 541
23 W 3638690 3789295 + 426615 MIER3L mesoderm induction early response protein 3-like XM_015300438.1 XP_015155924.1 602 GTTTCTCTGGTTCCTCCCCG TGGCCGAGGAAAGAAGTCTG 538
24 W 3847684 3849033 + 107055437 LOC107055437 endogenous retrovirus group K member 18 Pol protein-like XM_015300436.1 XP_015155922.1 449 AACTCTCCGCACCTFGGAAG AGCTGTACACACACAGGCTC 523
25 W 3906265 3971384 769000 SMAD2W SMAD family member 2-W XM_001232180.4 XP_001232181.2 467 AGCAGAGCTGTCTCCCAGTA TGCTTGTTACTGTTTGCCGC 563
26 W 3996042 3998479 107055441 LOC107055441 uncharacterized LOC107055441 XM_015300445.1 XP_015155931.1 248 ACATGCTGGCTCGAGTFFGA AACGTTCTATGAGGCCTGCC 529
27 W 4069695 4084145 776262 ST8SIA3W ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3-W XM_001235792.4 XP_001235793.3 432 TFACAACGTTTGCGCTGTGG CCCAAAGGGCCAGAATCCAT 502
28 W 4175497 4224565 431003 LOC431003 E3 ubiquitin-protein ligase KCMFl-like XM_015300446.1 XP_015155932.1 329 TGTGCAGCATTACCTGGAGG ACTGACGCTCTGCTTCTGAC 583
29 W 4303233 4416452 374014 SPIN1W spindlin 1-W NM_204191.1 NP_989522.1 262 ACGATCCAGAGCTGATGCAG TTCACCTGGTTCCCGTTCTG 592
30 W 4624865 4626568 107055442 LOC107055442 endogenous retrovirus group K member 18 Pol protein-like XM_015300452.1 XP_015155938.1 567 ACCCCGTGTCAGTCATTTCC GCAGGCAATGTGAAGGCAAA 512
31 W 4671567 4677341 107055443 LOC107055443 endogenous retrovirus group K member 25 Pol protein-like XM_015300453.1 XP_015155939.1 246 GCCCTTACCAACTGGGGTAC AATCACTGCATGGGACCAGG 588
32 W 4686614 4703657 107055444 RPTC15L activated RNA polymerase II transcriptional coactivator pi 5-like XM_015300454.1 XP_015155940.1 126 TGTGTCTTCAAGCTCATCTGCA GCTGGTTCCACTGTTCTGGA 314
33 W 4706658 4711173 107055445 LOC107055445 endogenous retrovirus group K member 25 Pol protein-like XM_015300456.1 XP_015155942.1 246 GCCCTTACCAACTGGGGTAC AATCACTGCATGGGACCAGG 588
34 W 4746744 4852709 + 427010 ZFRL1 zinc finger RNA-binding protein-like 1 XM_004938654.2 XP_004938711.2 1085 GCCTGGTTCTGGCATGTACT CACTTGTCGTGTTTGCTGGG 558
35 W 4900482 5016478 + 374195 CHDB1 chromodomain helicase DNA binding protein 1 XM_015300460.1 XP_015155946.1 1777 TTGGCATCTGCTGACACTGT GTCGCCACTGAACTTCTGGA 544
36 W 5058571 5156723 427025 NIPBLL Nipped-B homolog-like NM_001257348.1 NP_001244277.1 2769 CTCCAACTCCCCACCATGAC ACACAATGCTGAACAACCGC 520