Table 2. Nucleotide and amino acid similarities between the S genes of Vietnam IBVs and those of IBV reference strains

Accession number Strains VNUA3 VNUA8 VNUA11
Full S S1 S2 Full S S1 S2 Full S S1 S2
KY992863 VNUA3(in the study)
KY992864 VNUA8(in the study) 77.4 (82.5)1 72.3 (76.6) 81.5 (87.4)
KY992865 VNUA11(in the study) 62.7 (66.8) 52.7 (58.3) 69.5 (74.0) 64.9 (68.5) 56 (61.9) 71.2 (74.2)
AF286302 Q1 NA2 99.7 (99.4) NA NA 71.9 (76.6) NA NA 52.5 (58.3) NA
AF286303 J2 NA 99.7 (99.4) NA NA 72 (76.6) NA NA 52.6 (58.1) NA
KU364607 cK/CH/SCLS/140104 NA 99.9 (100) NA NA 72.1 (76.6) NA NA 52.7 (58.3) NA
KP780179 Ck/Italy/I2022/13 100 (100) 99.9 (100) 100 (100) 77.4 (82.5) 72.1 (76.6) 81.5 (87.4) 62.7 (66.8) 52.7 (58.3) 69.5 (74.0)
KJ524588 CK/CH/JS/YC11-2 NA 72.7 (76.8) NA NA 98.9 (97.9) NA NA 56 (61.9) NA
KX252788 ck/CH/LHLJ/08-6 77.7 (82.7) 72.7 (76.6) 81.7 (87.9) 98.9 (98.6) 98.4 (97.7) 99.3 (99.2) 64.8 (68.5) 55.8 (61.7) 71.2 (74.3)
KX219791 ck/CH/LHLJ/07I 77.4 (82.6) 72.2 (76.8) 81.4 (87.6) 98.8 (98.4) 98.4 (97.7) 99.1 (98.9) 64.9 (68.4) 56 (61.9) 70.9 (74.0)
JX840411 YX10 77.4 (82.6) 72.2 (76.6) 81.6 (87.4) 98.8 (98.2) 98.2 (97.0) 99.3 (99.0) 64.7 (68.3) 55.8 (61.3) 71 (74.2)
AF193423 QXIBV NA 73.2 (76.4) NA NA 96.5 (94.7) NA NA 56.9 (61.7) NA
AY189157 LX4 76.6 (81.6) 72.5 (76.2) 79.9 (86.3) 94.1 (94.7) 96.3 (94.2) 92.1 (95.0) 64.7 (68.5) 57 (61.7) 69.6 (74.3)
GQ265948 TC07-2 NA 52.3 (58.1) NA NA 56.4 (61.3) NA NA 97.9 (97.0) NA
KF663559 ck/CH/IBTZ/2012 62.7 (67.0) 52.6 (58.1) 69.6 (74.7) 65.1 (68.6) 56.1 (61.3) 71.5 (74.8) 98.1 (98.2) 97.6 (97.0) 98.5 (99.2)
KM365466 GX-NN120084 62.5 (66.7) 52.6 (58.1) 69.2 (74.0) 64.9 (68.3) 56.4 (61.7) 70.8 (74.2) 99.4 (99.0) 99.3 (98.7) 99.5 (99.3)
HQ018903 CK/CH/GD/NC10 NA 52.6 (58.5) NA NA 56.4 (62.1) NA NA 99.2 (98.9) NA
AY561713 Ma5 NA 72.8 (75.3) NA NA 73.3 (77.4) NA NA 53.5 (58.5) NA
KF377577 4/91 81.7 (85.7) 75.3 (76.6) 87 (93.7) 79.3 (84.4) 74 (78.3) 83.5 (89.5) 63.8 (67.7) 53.4 (58.7) 71.2 (75.5)
Nucleotide (amino acid) similarity (%).
NA, not available.